Dionysios Antonopoulos: search on Z-Library

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1

16S rRNA gene-based analysis of fecal microbiota from preterm infants with and without necrotizing enterocolitis

Wang, Yunwei, Hoenig, Jeanette D, Malin, Kathryn J, Qamar, Sanaa, Petrof, Elaine O, Sun, Jun, Antonopoulos, Dionysios A, Chang, Eugene B, Claud, Erika C

Journal:

The ISME Journal

Year:

2009

Language:

english

File:

PDF, 214 KB

english, 2009

2

The effects of warming and soil chemistry on bacterial community structure in Arctic tundra soils

Ricketts, Michael P., Matamala, Roser, Jastrow, Julie D., Antonopoulos, Dionysios A., Koval, Jason, Ping, Chien-Lu, Liang, Chao, Gonzalez-Meler, Miquel A.

Journal:

Soil Biology and Biochemistry

Year:

2020

File:

PDF, 1.96 MB

2020

3

Exercise Prevents Weight Gain and Alters the Gut Microbiota in a Mouse Model of High Fat Diet-Induced Obesity

Evans, Christian C., LePard, Kathy J., Kwak, Jeff W., Stancukas, Mary C., Laskowski, Samantha, Dougherty, Joseph, Moulton, Laura, Glawe, Adam, Wang, Yunwei, Leone, Vanessa, Antonopoulos, Dionysios A.,

Journal:

Year:

2014

Language:

english

File:

PDF, 1022 KB

english, 2014

4

Dietary-fat-induced taurocholic acid promotes pathobiont expansion and colitis in Il10−/− mice

Devkota, Suzanne, Wang, Yunwei, Musch, Mark W., Leone, Vanessa, Fehlner-Peach, Hannah, Nadimpalli, Anuradha, Antonopoulos, Dionysios A., Jabri, Bana, Chang, Eugene B.

Journal:

Year:

2012

Language:

english

File:

PDF, 1.05 MB

english, 2012

5

Phylogenetic reconstruction of Gram-positive organisms based on comparative sequence analysis of molecular chaperones from the ruminal microorganism Ruminococcus flavefaciens FD-1

Dionysios A. Antonopoulos, W.Michael Russell, Bryan A. White

Journal:

FEMS Microbiology Letters

Year:

2003

Language:

english

File:

PDF, 1.06 MB

english, 2003

6

Geochemical and microbiological processes contributing to the transformation of hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) in contaminated aquifer material

Man Jae Kwon, Edward J. O’Loughlin, Dionysios A. Antonopoulos, Kevin T. Finneran

Journal:

Year:

2011

Language:

english

File:

PDF, 782 KB

english, 2011

7

Early Transcriptomic Changes in the Ileal Pouch Provide Insight into the Molecular Pathogenesis of Pouchitis and Ulcerative Colitis

Huang, Yong, Dalal, Sushila, Antonopoulos, Dionysios, Hubert, Nathaniel, Raffals, Laura H., Dolan, Kyle, Weber, Christopher, Messer, Jeannette S., Jabri, Bana, Bendelac, Albert, Eren, A. Murat, Rubin,

Journal:

Inflammatory Bowel Diseases

Year:

2017

Language:

english

File:

PDF, 927 KB

english, 2017

8

Diversity of Bacteria at Healthy Human Conjunctiva

Dong, Qunfeng, Brulc, Jennifer M., Iovieno, Alfonso, Bates, Brandon, Garoutte, Aaron, Miller, Darlene, Revanna, Kashi V., Gao, Xiang, Antonopoulos, Dionysios A., Slepak, Vladlen Z., Shestopalov, Valer

Journal:

Investigative Ophthalmology & Visual Science

Year:

2011

Language:

english

File:

PDF, 529 KB

english, 2011

9

Genetic and Metabolic Signals during Acute Enteric Bacterial Infection Alter the Microbiota and Drive Progression to Chronic Inflammatory Disease

Kamdar, Karishma, Khakpour, Samira, Chen, Jingyu, Leone, Vanessa, Brulc, Jennifer, Mangatu, Thomas, Antonopoulos, Dionysios A., Chang, Eugene B., Kahn, Stacy A., Kirschner, Barbara S., Young, Glenn, D

Journal:

Cell Host & Microbe

Year:

2016

Language:

english

File:

PDF, 2.89 MB

english, 2016

10

Laser capture microdissection and metagenomic analysis of intact mucosa-associated microbial communities of human colon

Yunwei Wang, Dionysios A. Antonopoulos, Xiaorong Zhu, Laura Harrell, Ira Hanan, John C. Alverdy, Folker Meyer, Mark W. Musch, Vincent B. Young, Eugene B. Chang

Journal:

Applied Microbiology and Biotechnology

Year:

2010

Language:

english

File:

PDF, 485 KB

english, 2010

11

Meeting Report: The 2ndAnnual Argonne Soils Workshop, Argonne National Laboratory, Chicago Illinois, USA, October 6–8, 2010

O’Brien, Sarah L., Glass, Elizabeth M., Brulc, Jennifer M., Gilbert, Jack A., Antonopoulos, Dionysios A., Meyer, Folker

Journal:

Standards in Genomic Sciences

Year:

2011

Language:

english

File:

PDF, 164 KB

english, 2011

12

Gender Bias in Autoimmunity Is Influenced by Microbiota

Yurkovetskiy, Leonid, Burrows, Michael, Khan, Aly A., Graham, Laura, Volchkov, Pavel, Becker, Lev, Antonopoulos, Dionysios, Umesaki, Yoshinori, Chervonsky, Alexander V.

Journal:

Year:

2013

Language:

english

File:

PDF, 2.46 MB

english, 2013

13

The GAAS Metagenomic Tool and Its Estimations of Viral and Microbial Average Genome Size in Four Major Biomes

Angly, Florent E., Willner, Dana, Prieto-Davó, Alejandra, Edwards, Robert A., Schmieder, Robert, Vega-Thurber, Rebecca, Antonopoulos, Dionysios A., Barott, Katie, Cottrell, Matthew T., Desnues, Christ

Journal:

PLoS Computational Biology

Year:

2009

Language:

english

File:

PDF, 1018 KB

english, 2009

14

A Western Diet Ecological Module Identified from the ‘Humanized’ Mouse Microbiota Predicts Diet in Adults and Formula Feeding in Children

Siddharth, Jay, Holway, Nicholas, Parkinson, Scott J., Antonopoulos, Dionysios A.

Journal:

Year:

2013

Language:

english

File:

PDF, 4.82 MB

english, 2013

15

BMP signaling components in embryonic transcriptomes of the hover flyEpisyrphus balteatus(Syrphidae)

Steffen Lemke, Dionysios A Antonopoulos, Folker Meyer, Marc H Domanus, Urs Schmidt-Ott

Journal:

Year:

2011

Language:

english

File:

PDF, 935 KB

english, 2011

16

43 Dietary Fat-Induced Taurocholic Acid Production Promotes Pathobiont and Colitis in IL-10-/- Mice

Suzanne Devkota, Yunwei Wang, Mark W. Musch, Vanessa Leone, Hannah Fehlner-Peach, Anuradha Nadimpalli, Dionysios Antonopoulos, Bana Jabri, Eugene B. Chang

Journal:

Gastroenterology

Year:

2012

Language:

english

File:

PDF, 65 KB

english, 2012

17

Su1876 Replacement of Insoluble Fiber (IF) With Soluble Fiber (SF) in a Purified-Ingredient Openstandard Diet Increases Cecal and Colonic Weights Similar to Grain-Based Chows (Chows) and Distinctly Alters Microbiota in Weanling Male C57BL/6N Mice

Pellizzon, Michael A., Ricci, Matthew R., Compton, Douglas S., Rocheford, Erik C., Antonopoulos, Dionysios A., Koval, Jason C., Ulman, Edward

Journal:

Gastroenterology

Year:

2015

Language:

english

File:

PDF, 70 KB

english, 2015

18

Transplanting a Microbial Organ: the Good, the Bad, and the Unknown

Antonopoulos, Dionysios A., Chang, Eugene B.

Journal:

Year:

2016

Language:

english

File:

PDF, 156 KB

english, 2016

19

Regional Mucosa-Associated Microbiota Determine Physiological Expression of TLR2 and TLR4 in Murine Colon

Wang, Yunwei, Devkota, Suzanne, Musch, Mark W., Jabri, Bana, Nagler, Cathryn, Antonopoulos, Dionysios A., Chervonsky, Alexander, Chang, Eugene B., Yang, Ching-Hong

Journal:

Year:

2010

Language:

english

File:

PDF, 2.08 MB

english, 2010

20

Parallelized, Aerobic, Single Carbon-Source Enrichments from Different Natural Environments Contain Divergent Microbial Communities

Flynn, Theodore M., Koval, Jason C., Greenwald, Stephanie M., Owens, Sarah M., Kemner, Kenneth M., Antonopoulos, Dionysios A.

Journal:

Frontiers in Microbiology

Year:

2017

Language:

english

File:

PDF, 5.29 MB

english, 2017

21

Suppressive subtractive hybridization as a tool for identifying genetic diversity in an environmental metagenome: the rumen as a model

Elizabeth A. Galbraith, Dionysios A. Antonopoulos, Bryan A. White

Journal:

Environmental Microbiology

Year:

2004

Language:

english

File:

PDF, 246 KB

english, 2004

22

Polymorphic Immune Mechanisms Regulate Commensal Repertoire

Khan, Aly A., Yurkovetskiy, Leonid, O’Grady, Kelly, Pickard, Joseph M., de Pooter, Renée, Antonopoulos, Dionysios A., Golovkina, Tatyana, Chervonsky, Alexander

Journal:

Year:

2019

Language:

english

File:

PDF, 2.70 MB

english, 2019

23

Strain-specific genomic regions of Ruminococcus flavefaciens FD-1 as revealed by combinatorial random-phase genome sequencing and suppressive subtractive hybridization

Dionysios A. Antonopoulos, Karen E. Nelson, Mark Morrison, Bryan A. White

Journal:

Environmental Microbiology

Year:

2004

Language:

english

File:

PDF, 363 KB

english, 2004

24

Spatial scale drives patterns in soil bacterial diversity

O'Brien, Sarah L., Gibbons, Sean M., Owens, Sarah M., Hampton-Marcell, Jarrad, Johnston, Eric R., Jastrow, Julie D., Gilbert, Jack A., Meyer, Folker, Antonopoulos, Dionysios A.

Journal:

Environmental Microbiology

Year:

2016

Language:

english

File:

PDF, 699 KB

english, 2016

25

B cell depletion therapy upregulates Dkk-1 skin expression in patients with systemic sclerosis: association with enhanced resolution of skin fibrosis

Daoussis, Dimitrios, Tsamandas, Athanassios, Antonopoulos, Ioannis, Filippopoulou, Alexandra, Papachristou, Dionysios J., Papachristou, Nicholaos I., Andonopoulos, Andrew P., Liossis, Stamatis-Nick

Journal:

Arthritis Research & Therapy

Year:

2016

Language:

english

File:

PDF, 3.63 MB

english, 2016

26

Comparison of brush and biopsy sampling methods of the ileal pouch for assessment of mucosa-associated microbiota of human subjects

Huse, Susan M, Young, Vincent B, Morrison, Hilary G, Antonopoulos, Dionysios A, Kwon, John, Dalal, Sushila, Arrieta, Rose, Hubert, Nathaniel A, Shen, Lici, Vineis, Joseph H, Koval, Jason C, Sogin, Mit

Journal:

Year:

2014

Language:

english

File:

PDF, 1.11 MB

english, 2014

27

Synthesis and chemical modification of homoseryl peptides

Barlos, Kleomenis, Mamos, Petros, Papaioannou, Dionysios, Sanida, Chariklia, Antonopoulos, Christos

Journal:

Journal of the Chemical Society Chemical Communications

Year:

1986

Language:

english

File:

PDF, 187 KB

english, 1986

28

Characterization of the gene encoding glutamate dehydrogenase (gdhA) from the ruminal bacteriumRuminococcus flavefaciensFD-1

Dionysios A. Antonopoulos,Rustam I. Aminov,Paul A. Duncan…

Journal:

Archives of Microbiology

Year:

2003

Language:

english

File:

PDF, 280 KB

english, 2003

29

W1843 Voluntary Exercise Alters Enteric Microbiota but Not Intestinal Transit

Stancukas, Mary C., Evans, Christian C., Wang, Yunwei, Devkota, Suzanne, Drabik, Kenneth, Antonopoulos, Dionysios, Chang, Eugene B., LePard, Kathy J., Ciancio, Mae J.

Journal:

Gastroenterology

Year:

2010

Language:

english

File:

PDF, 52 KB

english, 2010

30

Relationships between Bacterial Community Composition, Functional Trait Composition and Functioning Are Context Dependent – but What Is the Context?

Severin, Ina, Lindström, Eva S., Östman, Örjan, Antonopoulos, Dionysios A.

Journal:

Year:

2014

Language:

english

File:

PDF, 680 KB

english, 2014

31

Decreased Diversity of the Fecal Microbiome in Recurrent Clostridium difficile –Associated Diarrhea

Chang, Ju Young, Antonopoulos, Dionysios A., Kalra, Apoorv, Tonelli, Adriano, Khalife, Walid T., Schmidt, Thomas M., Young, Vincent B.

Journal:

The Journal of Infectious Diseases

Year:

2008

Language:

english

File:

PDF, 1.09 MB

english, 2008

32

Su2060 Small Intestinal Microbial Composition Is Different in Veterans With Gulf War Illness

Setty, Prashanth, Antonopoulos, Dionysios A., Mills, Natalie, Chang, Eugene B., Bard, Julie, Koval, Jason C., Lin, Henry C.

Journal:

Gastroenterology

Year:

2014

Language:

english

File:

PDF, 204 KB

english, 2014

33

Patient-Specific Bacteroides Genome Variants in Pouchitis

Vineis, Joseph H., Ringus, Daina L., Morrison, Hilary G., Delmont, Tom O., Dalal, Sushila, Raffals, Laura H., Antonopoulos, Dionysios A., Rubin, David T., Eren, A. Murat, Chang, Eugene B., Sogin, Mitc

Journal:

Year:

2016

Language:

english

File:

PDF, 1.83 MB

english, 2016

34

Metagenomic Profiling of a Microbial Assemblage Associated with the California Mussel: A Node in Networks of Carbon and Nitrogen Cycling

Pfister, Catherine A., Meyer, Folker, Antonopoulos, Dionysios A., DeSalle, Robert

Journal:

Year:

2010

Language:

english

File:

PDF, 350 KB

english, 2010

35

Metagenomic alterations in gut microbiota precede and predict onset of colitis in the IL10 gene-deficient murine model

Miyoshi, Jun, Lee, Sonny T.M., Kennedy, Megan, Puertolas, Mora, Frith, Mary, Koval, Jason C., Miyoshi, Sawako, Antonopoulos, Dionysios A., Leone, Vanessa, Chang, Eugene B.

Journal:

CMGH Cellular and Molecular Gastroenterology and Hepatology

Year:

2020

File:

PDF, 17.26 MB

2020

36

Effects of dissimilatory sulfate reduction on FeIII (hydr)oxide reduction and microbial community development

Kwon, Man Jae, Boyanov, Maxim I., Antonopoulos, Dionysios A., Brulc, Jennifer M., Johnston, Eric R., Skinner, Kelly A., Kemner, Kenneth M., O’Loughlin, Edward J.

Journal:

Geochimica et Cosmochimica Acta

Year:

2014

Language:

english

File:

PDF, 1.48 MB

english, 2014

37

Tracking microbial colonization in fecal microbiota transplantation experiments via genome-resolved metagenomics

Lee, Sonny T. M., Kahn, Stacy A., Delmont, Tom O., Shaiber, Alon, Esen, Özcan C., Hubert, Nathaniel A., Morrison, Hilary G., Antonopoulos, Dionysios A., Rubin, David T., Eren, A. Murat

Journal:

Year:

2017

Language:

english

File:

PDF, 1.34 MB

english, 2017

38

Tu1829 - Peripartum Exposure to Antibiotics Induces Persistent Gut Dysbiosis, Skews Host Immune System Development and Increases Risk for Inflammatory Bowel Disease in Genetically Susceptible offspring

Miyoshi, Jun, Leone, Vanessa, Yang, Karen, Miyoshi, Sawako, Delmont, Tom O., Eren, A. Murat, Huang, Yong, Hubert, Nathaniel, Antonopoulos, Dionysios A., Chang, Eugene B.

Journal:

Gastroenterology

Year:

2018

Language:

english

File:

PDF, 485 KB

english, 2018

39

Impact of Organic Carbon Electron Donors on Microbial Community Development under Iron- and Sulfate-Reducing Conditions

Kwon, Man Jae, O’Loughlin, Edward J., Boyanov, Maxim I., Brulc, Jennifer M., Johnston, Eric R., Kemner, Kenneth M., Antonopoulos, Dionysios A., Senko, John M.

Journal:

Year:

2016

Language:

english

File:

PDF, 2.35 MB

english, 2016

40

M1767 Regional Differences of Mucosa-Associated Microbiota are Essential for Longitudinal Expression of TLR2 and TLR4 in Murine Colon

Wang, Yunwei, Devkota, Suzanne, Antonopoulos, Dionysios, Drabik, Kenneth, Musch, Mark W., Chang, Eugene B.

Journal:

Gastroenterology

Year:

2010

Language:

english

File:

PDF, 48 KB

english, 2010

41

PATRIC as a unique resource for studying antimicrobial resistance

Antonopoulos, Dionysios A., Assaf, Rida, Aziz, Ramy Karam, Brettin, Thomas, Bun, Christopher, Conrad, Neal, Davis, James J., Dietrich, Emily M., Disz, Terry, Gerdes, Svetlana, Kenyon, Ronald W., Machi

Journal:

Briefings in Bioinformatics

Year:

2017

Language:

english

File:

PDF, 875 KB

english, 2017

42

W1622 Metagenomic Analysis of Intact Mucosa-Associated Microbial Communities of the Human Colon

Wang, Yunwei, Antonopoulos, Dionysios, Zhu, Xiaorong, Lichtenstein, Lev, Drabik, Kenneth, Alverdy, John C., Meyer, Folker, Young, Vincent, Chang, Eugene B.

Journal:

Gastroenterology

Year:

2009

Language:

english

File:

PDF, 77 KB

english, 2009

43

Tu1751 The Convergence of Stasis-Induced Dysbiosis, Colonic Metaplasia, and Genetic Susceptibility in Increasing Risk of Pouchitis and Ulcerative Colitis

Ward, Marc A., Pierre, Joseph F., Leal, Raquel F., Huang, Yong, Musch, Mark W., Wang, Yunwei, Leone, Vanessa, Shogan, Benjamin, Raffals, Laura H., Antonopoulos, Dionysios A., Alverdy, John C., Chang,

Journal:

Gastroenterology

Year:

2014

Language:

english

File:

PDF, 264 KB

english, 2014

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